cpgreport scans a nucleotide sequence for
regions with higher than expected frequencies of the dinucleotide CG.
Here is a sample session with cpgreport:
% cpgreport embl:rnu68037
Reports CpG rich regions
CpG score [17]:
Output file [rnu68037.cpgreport]:
Mandatory qualifiers:
- [-sequence] (seqall)
-
Sequence database USA.
- -score (integer)
-
This sets the score for each CG sequence found. A value of
17 is more sensitive, but 28
has also been used with some success.
- [-outfile] (outfile)
-
Output filename.
Advanced qualifiers:
- -featout (featout)
-
File for output features.
|
