cutseq allows you to cut out a region from your
sequence by specifying the begin and end positions of the sequence to
remove.
To remove bases 10 to 12 from a sequence
gatta.seq and write to the new sequence file
gatta2.seq:
% cutseq gatta.seq gatta2.seq -from=10 -to=12 To remove the first 20 bases from hatta.seq and
write it to jsh.seq:
% cutseq -seq=hatta.seq -from=1 -to=20 -out=jsh.seq
Mandatory qualifiers:
- [-sequence] (sequence)
-
Sequence USA.
- -from (integer)
-
This is the start position (inclusive) of the section of the sequence
that you want to remove.
- -to (integer)
-
This is the end position (inclusive) of the section of the sequence
that you want to remove.
- [-outseq] (seqout)
-
Output sequence USA.
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