garnier is an implementation of the original Garnier-Osguthorpe-Robson algorithm (GOR I) for predicting protein secondary structure.

Here is a sample session with garnier:

% garnier
Input sequence: sw:amic_pseae
Output file [amic_pseae.garnier]:

Mandatory qualifiers:

[-sequencea] (seqall)

Sequence database USA.

[-outfile] (report)

Output report filename.

Advanced qualifiers:

-idc (integer)

Set an idc parameter.