marscan finds MAR/SAR sites in nucleic sequences.

Here is a sample session with marscan:

% marscan
marscan
Finds MAR/SAR sites in nucleic sequences
Input sequence(s): EMBL:HSHBB
Output file [hshbb.marscan]:

Mandatory qualifiers:

[-sequence] (seqall)

Sequence database USA.

[-outfile] (report)

File for output of MAR/SAR recognition signature (MRS) regions. This contains details of the MRS in normal GFF format. The MRS consists of two recognition sites: one of 8 bp and one of 16 bp on either sense strand of the genomic DNA, within 200 bp of one another.