megamerger takes two overlapping sequences and merges them into one sequence. It could thus be regarded as the opposite of what splitter does.

Here is a sample session with megamerger. There are many mismatches between these two sequences and the merged sequence should therefore be treated with great caution:

% megamerger embl:ap000504 embl:af129756
Merge two large overlapping nucleic acid sequences
Word size [20]:
Output sequence [ap000504.merged]:
Output file [ap000504.megamerger]:

Mandatory qualifiers:

[-seqa] (sequence)

Sequence USA.

[-seqb] (sequence)

Sequence USA.

-wordsize (integer)

Word size.

[-outseq] (seqout)

Output sequence USA.

[-report] (outfile)

Output report.