plotorf plots potential open reading frames.

Here is a sample session with plotorf:

% plotorf
Plot potential open reading frames
Input sequence: embl:paamir
Graph type [x11]:

Specifying your own START and STOP codons with a mitochondrial sequence:

% plotorf -start ATT,ATC,ATA,ATG,GTG -stop TAA,TAG,AGA,AGG
Plot potential open reading frames
Input sequence: mito.seq
Graph type [x11]:

Mandatory qualifiers:

[-sequence] (sequence)

Sequence USA.

-graph (xygraph)

Graph type.

Advanced qualifiers:

-start (string)

Start codons.

-stop (string)

Stop codons.