sigcleave reports protein signal cleavage sites.

Here is a sample session with sigcleave:

% sigcleave
Reports peptide signal cleavage sites
Input sequence: sw:ach2_drome
Output file [ach2_drome.out]:
Minimum weight [3.5]:

Mandatory qualifiers:

[-sequence] (seqall)

Sequence database USA.

-minweight (float)

Minimum scoring weight value for the predicted cleavage site.

[-outfile] (report)

Output report filename.

Optional qualifiers:

-prokaryote (boolean)

Specifies the sequence is prokaryotic and changes the default scoring data filename.

Advanced qualifiers:

-pval (integer)

Specifies the number of columns before the residue at the cleavage site in the weight matrix table.

-nval (integer)

Specifies the number of columns after the residue at the cleavage site in the weight matrix table.