stssearch searches a DNA sequence database with a set of STS primers and reports expected matches and possible mismatches.

Here is a sample session with stssearch:

% stssearch
Input sequence(s): embl:eclac*
Primer file: lac.primers

Mandatory qualifiers:

[-sequences] (seqall)

Sequence database USA.

[-primers] (infile)

Primer file.

[-out] (outfile)

Output filename.