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yank

yank is a simple utility that adds a specified sequence name to a list file.

Here is a sample session with yank, adding the regions making up the coding sequence of embl:hsfau1 to the list cds.list:

% yank
Reads a range from a sequence, appends the full USA to a list file
Input sequence: em:hsfau1
     Begin at position [start]: 782
       End at position [end]: 856
        Reverse strand [N]:
Output file [hsfau1.yank]: cds.list
% yank
Reads a range from a sequence, appends the full USA to a list file
Input sequence: em:hsfau1
     Begin at position [start]: 951
       End at position [end]: 1095
        Reverse strand [N]:
Output file [hsfau1.yank]: cds.list
   
% yank
Reads a range from a sequence, appends the full USA to a list file
Input sequence: em:hsfau1
     Begin at position [start]: 1557
       End at position [end]: 1612
        Reverse strand [N]:
Output file [hsfau1.yank]: cds.list
   
% yank
Reads a range from a sequence, appends the full USA to a list file
Input sequence: em:hsfau1
     Begin at position [start]: 1787
       End at position [end]: 1912
        Reverse strand [N]:
Output file [hsfau1.yank]: cds.list

Mandatory qualifiers:

[-sequence] (sequence)

Sequence USA.

[-outfile] (outfile)

Output filename.

Advanced qualifiers:

-newfile (boolean)

Overwrite existing output file.

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