yank is a
simple utility that adds a specified sequence name to a list file.
Here is a sample session with yank, adding the
regions making up the coding sequence of
embl:hsfau1 to the list
cds.list:
% yank
Reads a range from a sequence, appends the full USA to a list file
Input sequence: em:hsfau1
Begin at position [start]: 782
End at position [end]: 856
Reverse strand [N]:
Output file [hsfau1.yank]: cds.list
% yank
Reads a range from a sequence, appends the full USA to a list file
Input sequence: em:hsfau1
Begin at position [start]: 951
End at position [end]: 1095
Reverse strand [N]:
Output file [hsfau1.yank]: cds.list
% yank
Reads a range from a sequence, appends the full USA to a list file
Input sequence: em:hsfau1
Begin at position [start]: 1557
End at position [end]: 1612
Reverse strand [N]:
Output file [hsfau1.yank]: cds.list
% yank
Reads a range from a sequence, appends the full USA to a list file
Input sequence: em:hsfau1
Begin at position [start]: 1787
End at position [end]: 1912
Reverse strand [N]:
Output file [hsfau1.yank]: cds.list
Mandatory qualifiers:
- [-sequence] (sequence)
-
Sequence USA.
- [-outfile] (outfile)
-
Output filename.
Advanced qualifiers:
- -newfile (boolean)
-
Overwrite existing output file.
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