cirdna draws circular maps of DNA constructs.
Here is a sample session with cirdna:
% cirdna
Draws circular maps of DNA constructs
Graph type [x11]:
Input file [inputfile]: data.cirp
do you want a ruler (Y or N) [Y]:
type of blocks (enter Open, Filled, or Outline) [Filled]:
ticks inside or outside the circle (enter In or Out) [Out]:
text inside or outside the blocks (enter In or Out) [In]:
Mandatory qualifiers:
- -graphout (graph)
-
Graph type.
- -inputfile (infile)
-
Input file containing mapping data.
- -ruler (string)
-
Do you want a ruler (Y or N)?
- -blocktype (string)
-
Type of blocks: Open, Gilled,
or Outline. Outline draws
filled blocks surrounded by a black border.
- -posticks (string)
-
Ticks inside or outside the circle (enter In or
Out).
- -posblocks (string)
-
Text inside or outside the blocks (enter In or
out).
Optional qualifiers:
- -originangle (float)
-
Position of the molecule's origin on the circle
(enter a number in the range 0-360).
- -intersymbol (string)
-
Do you want horizontal junctions between blocks (Y
or N)?
- -intercolor (integer)
-
Color of junctions between blocks (enter a color number).
- -interticks (string)
-
Do you want horizontal junctions between ticks (Y
or N)?
- -gapsize (integer)
-
Interval between ticks in the ruler (enter an integer).
- -ticklines (string)
-
Do you want vertical lines at the ruler's ticks
(Y or N)?
- -textheight (float)
-
Height of text; enter a number less than or greater than one to
decrease or increase the size, respectively.
- -textlength (float)
-
Length of text; enter a number less than or greater than one to
decrease or increase the size, respectively.
- -tickheight (float)
-
Height of ticks; enter a number less than or greater than one to
decrease or increase the size, respectively.
- -blockheight (float)
-
Height of blocks; enter a number less than or greater than one to
decrease or increase the size, respectively.
- -rangeheight (float)
-
Height of range ends; enter a number less than or greater than one to
decrease or increase the size, respectively.
- -gapgroup (float)
-
Space between groups; enter a number less than or greater than one to
decrease or increase the size, respectively.
- -postext (float)
-
Space between text and ticks, blocks, and ranges; enter a number less
than or greater than one to decrease or increase the size,
respectively.
|
