[SYMBOL]
[A]
[B]
[C]
[D]
[E]
[F]
[G]
[H]
[I]
[J]
[K]
[L]
[M]
[N]
[O]
[P]
[Q]
[R]
[S]
[T]
[U]
[V]
[W]
[Y]
FASTA
flat file database, indexing
open source tools and
feature formats, EMBOSS
feature tables
DDBJ/EMBL/GenBank
extracting CDS/mRNA/translations from
SWISS-PROT
writing representation of to standard output
features
locations
masking
qualifiers
tables of
[See feature tables]
field definitions
DDBJ flat files
EMBL flat files
GenBank flat files
Pfam flat files
PROSITE flat files
SWISS-PROT flat files
files
ABI sequence trace
ASCII, removing carriage returns from
codon usage table
coordinate
writing protein-heterogen contact data files from
dinucleotides, counting number of
domains coordinate files, writing from protein coordinate files
EMBL CD-ROM format index
building from BLAST database
building from FASTA flat file database
building from flat file database
building from GCG-format database
EMBL-like format, writing SCOP classification to
EMBOSS data, determining directories that can hold
enzymatic data of, plottng
FASTA
sequence entries in
zzz
[See also FASTA][See also FASTA]
flat
[See flat files]
hexanucleotides, counting number of
inter-chain residue-residue contact data
writing
intra-chain residue-residue contact data
mass spectrometry result
PDB, parsing
profile matrix, creating from nucleic acid sequences
protein coordinate
writing domains coordinate files from
writing from PDB files
SCOP classification
converting/writing to EMBL-like format files
removing low-resolution domains from
removing redundant domains from
SWISS-PROT:PDB-equivalence, converting to EMBL-like format
trinucleotides, counting number of
typing sequences into
findkm program (EMBOSS)
flat file databases, indexing
flat files
DDBJ example
EMBL example
GenBank example
Pfam example
PROSITE example
SWISS-PROT example
flatworm mitochondrial code
formatdb program
formatdb program (BLAST)
freak program (EMBOSS)
frequency tables, codon
funky program (EMBOSS)
fuzznuc program (EMBOSS)
fuzzpro program (EMBOSS)
fuzztran program (EMBOSS)
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