[SYMBOL]
[A]
[B]
[C]
[D]
[E]
[F]
[G]
[H]
[I]
[J]
[K]
[L]
[M]
[N]
[O]
[P]
[Q]
[R]
[S]
[T]
[U]
[V]
[W]
[Y]
cai program (EMBOSS)
carriage returns, removing from ASCII files
cDNA sequences, producing from aligned protein sequences
CGI web server, Readseq and
change indicators, SWISS-PROT feature table
chaos program (EMBOSS)
charge program (EMBOSS)
checktrans program (EMBOSS)
chips program (EMBOSS)
chlorophycean mitochondrial code
ciliate code
cirdna program (EMBOSS)
ClustalW
command-line options
emma program as interface to
codcmp program (EMBOSS)
code, genetic
alternative flatworm mitochondrial
alternative yeast nuclear
ascidian mitochondrial
bacterial
blepharisma nuclear
chlorophycean mitochondrial
ciliate
coelenterate mitochondrial
dasycladacean
echinoderm
euplotid nuclear
flatworm mitochondrial
hexamita nuclear
invertebrate mitochondrial
mold
mycoplasma
plant plastid
protozoan
scenedesmus obliquus mitochondrial
spiroplasma
standard
thraustochytrium mitochondrial
trematode mitochondrial
yeast mitochondrial
coderet program (EMBOSS)
codes
coding sequences, calculating codon frequency table from
nucleotide
Codon Adaptation Index, calculating
codon frequency tables
calculating from coding frequency
codon usage table files
coelenterate mitochondrial code
coiled-coil structures, calculating probability of
colon (:), EMBOSS USA syntax
command-line options
BLAST
BLAT
ClustalW
MEME
Readseq
comments, FASTA
compseq program (EMBOSS)
cons program (EMBOSS)
consensus sequence, calculating from multiple sequence alignment
contacts program (EMBOSS)
coordinate files
reading
writing protein-heterogen contact data files from
CpG regions, identifying
CPGISLE database, producing entry format reports
cpgplot program (EMBOSS)
cpgreport program (EMBOSS)
crystalball program
Ctrl-A characters, NCBI nonredundant database syntax
cusp program (EMBOSS)
cut sites, predicting in DNA sequences
CUTG, extracting data from
cutgextract program (EMBOSS)
cutseq program (EMBOSS)
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